diff --git a/erpnext/patches/v14_0/delete_education_doctypes.py b/erpnext/patches/v14_0/delete_education_doctypes.py
index 468c2fda32..56a596a02e 100644
--- a/erpnext/patches/v14_0/delete_education_doctypes.py
+++ b/erpnext/patches/v14_0/delete_education_doctypes.py
@@ -43,14 +43,17 @@ def execute():
 		frappe.delete_doc("Number Card", card, ignore_missing=True, force=True)
 
 	doctypes = frappe.get_all("DocType", {"module": "education", "custom": 0}, pluck="name")
+
 	for doctype in doctypes:
 		frappe.delete_doc("DocType", doctype, ignore_missing=True)
 
-	portal_menu_items = frappe.get_all(
-		"Portal Menu Item", {"reference_doctype": ("in", doctypes)}, pluck="name"
-	)
-	for menu_item in portal_menu_items:
-		frappe.delete_doc("Portal Menu Item", menu_item, ignore_missing=True, force=True)
+	portal_settings = frappe.get_doc("Portal Settings")
+
+	for row in portal_settings.get("menu"):
+		if row.reference_doctype in doctypes:
+			row.delete()
+
+	portal_settings.save()
 
 	frappe.delete_doc("Module Def", "Education", ignore_missing=True, force=True)