diff --git a/erpnext/stock/report/stock_ledger_invariant_check/stock_ledger_invariant_check.py b/erpnext/stock/report/stock_ledger_invariant_check/stock_ledger_invariant_check.py
index 7826d34422..1ba2482935 100644
--- a/erpnext/stock/report/stock_ledger_invariant_check/stock_ledger_invariant_check.py
+++ b/erpnext/stock/report/stock_ledger_invariant_check/stock_ledger_invariant_check.py
@@ -21,6 +21,7 @@ SLE_FIELDS = (
 	"stock_value",
 	"stock_value_difference",
 	"valuation_rate",
+	"voucher_detail_no",
 )
 
 
@@ -66,7 +67,9 @@ def add_invariant_check_fields(sles):
 		balance_qty += sle.actual_qty
 		balance_stock_value += sle.stock_value_difference
 		if sle.voucher_type == "Stock Reconciliation" and not sle.batch_no:
-			balance_qty = sle.qty_after_transaction
+			balance_qty = frappe.db.get_value("Stock Reconciliation Item", sle.voucher_detail_no, "qty")
+			if balance_qty is None:
+				balance_qty = sle.qty_after_transaction
 
 		sle.fifo_queue_qty = fifo_qty
 		sle.fifo_stock_value = fifo_value