diff --git a/erpnext/regional/india/setup.py b/erpnext/regional/india/setup.py
index 5ef04b66c7..92654608da 100644
--- a/erpnext/regional/india/setup.py
+++ b/erpnext/regional/india/setup.py
@@ -12,7 +12,10 @@ from erpnext.accounts.utils import get_fiscal_year, FiscalYearError
 from frappe.utils import today
 
 def setup(company=None, patch=True):
-	setup_company_independent_fixtures(patch=patch)
+	# Company independent fixtures should be called only once at the first company setup
+	if frappe.db.count('Company', {'country': 'India'}) <=1:
+		setup_company_independent_fixtures(patch=patch)
+
 	if not patch:
 		make_fixtures(company)
 
@@ -122,8 +125,8 @@ def add_print_formats():
 def make_property_setters(patch=False):
 	# GST rules do not allow for an invoice no. bigger than 16 characters
 	journal_entry_types = frappe.get_meta("Journal Entry").get_options("voucher_type").split("\n") + ['Reversal Of ITC']
-	sales_invoice_series = frappe.get_meta("Sales Invoice").get_options("naming_series").split("\n") + ['SINV-.YY.-', 'SRET-.YY.-', '']
-	purchase_invoice_series = frappe.get_meta("Purchase Invoice").get_options("naming_series").split("\n") + ['PINV-.YY.-', 'PRET-.YY.-', '']
+	sales_invoice_series = ['SINV-.YY.-', 'SRET-.YY.-', ''] + frappe.get_meta("Sales Invoice").get_options("naming_series").split("\n")
+	purchase_invoice_series = ['PINV-.YY.-', 'PRET-.YY.-', ''] + frappe.get_meta("Purchase Invoice").get_options("naming_series").split("\n")
 
 	if not patch:
 		make_property_setter('Sales Invoice', 'naming_series', 'options', '\n'.join(sales_invoice_series), '')
@@ -788,7 +791,7 @@ def set_tax_withholding_category(company):
 			doc.flags.ignore_mandatory = True
 			doc.insert()
 		else:
-			doc = frappe.get_doc("Tax Withholding Category", d.get("name"))
+			doc = frappe.get_doc("Tax Withholding Category", d.get("name"), for_update=True)
 
 			if accounts:
 				doc.append("accounts", accounts[0])
diff --git a/erpnext/setup/doctype/company/company.py b/erpnext/setup/doctype/company/company.py
index 915e6a4f31..382510d0be 100644
--- a/erpnext/setup/doctype/company/company.py
+++ b/erpnext/setup/doctype/company/company.py
@@ -291,7 +291,7 @@ class Company(NestedSet):
 		cash = frappe.db.get_value('Mode of Payment', {'type': 'Cash'}, 'name')
 		if cash and self.default_cash_account \
 			and not frappe.db.get_value('Mode of Payment Account', {'company': self.name, 'parent': cash}):
-			mode_of_payment = frappe.get_doc('Mode of Payment', cash)
+			mode_of_payment = frappe.get_doc('Mode of Payment', cash, for_update=True)
 			mode_of_payment.append('accounts', {
 				'company': self.name,
 				'default_account': self.default_cash_account